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"""Hook for Google Cloud Life Sciences service"""
from __future__ import annotations

import time
from typing import Sequence

import google.api_core.path_template
from googleapiclient.discovery import build

from airflow.exceptions import AirflowException
from import GoogleBaseHook

# Time to sleep between active checks of the operation results
[docs]class LifeSciencesHook(GoogleBaseHook): """ Hook for the Google Cloud Life Sciences APIs. All the methods in the hook where project_id is used must be called with keyword arguments rather than positional. :param api_version: API version used (for example v1 or v1beta1). :param gcp_conn_id: The connection ID to use when fetching connection info. :param delegate_to: The account to impersonate using domain-wide delegation of authority, if any. For this to work, the service account making the request must have domain-wide delegation enabled. :param impersonation_chain: Optional service account to impersonate using short-term credentials, or chained list of accounts required to get the access_token of the last account in the list, which will be impersonated in the request. If set as a string, the account must grant the originating account the Service Account Token Creator IAM role. If set as a sequence, the identities from the list must grant Service Account Token Creator IAM role to the directly preceding identity, with first account from the list granting this role to the originating account. """ _conn = None def __init__( self, api_version: str = "v2beta", gcp_conn_id: str = "google_cloud_default", delegate_to: str | None = None, impersonation_chain: str | Sequence[str] | None = None, ) -> None: super().__init__( gcp_conn_id=gcp_conn_id, delegate_to=delegate_to, impersonation_chain=impersonation_chain, ) self.api_version = api_version
[docs] def get_conn(self) -> build: """ Retrieves the connection to Cloud Life Sciences. :return: Google Cloud Life Sciences service object. """ if not self._conn: http_authorized = self._authorize() self._conn = build("lifesciences", self.api_version, http=http_authorized, cache_discovery=False) return self._conn
[docs] def run_pipeline(self, body: dict, location: str, project_id: str) -> dict: """ Runs a pipeline :param body: The request body. :param location: The location of the project. For example: "us-east1". :param project_id: Optional, Google Cloud Project project_id where the function belongs. If set to None or missing, the default project_id from the Google Cloud connection is used. """ parent = self._location_path(project_id=project_id, location=location) service = self.get_conn() request = service.projects().locations().pipelines().run(parent=parent, body=body) response = request.execute(num_retries=self.num_retries) # wait operation_name = response["name"] self._wait_for_operation_to_complete(operation_name) return response
@GoogleBaseHook.fallback_to_default_project_id def _location_path(self, project_id: str, location: str) -> str: """ Return a location string. :param project_id: Optional, Google Cloud Project project_id where the function belongs. If set to None or missing, the default project_id from the Google Cloud connection is used. :param location: The location of the project. For example: "us-east1". """ return google.api_core.path_template.expand( "projects/{project}/locations/{location}", project=project_id, location=location, ) def _wait_for_operation_to_complete(self, operation_name: str) -> None: """ Waits for the named operation to complete - checks status of the asynchronous call. :param operation_name: The name of the operation. :return: The response returned by the operation. :exception: AirflowException in case error is returned. """ service = self.get_conn() while True: operation_response = ( service.projects() .locations() .operations() .get(name=operation_name) .execute(num_retries=self.num_retries) )"Waiting for pipeline operation to complete") if operation_response.get("done"): response = operation_response.get("response") error = operation_response.get("error") # Note, according to documentation always either response or error is # set when "done" == True if error: raise AirflowException(str(error)) return response time.sleep(TIME_TO_SLEEP_IN_SECONDS)

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